Skip to main content

Table 3 Pathogenicity score of missense mutations

From: Identification of novel mutations in congenital afibrinogenemia patients and molecular modeling of missense mutations in Pakistani population

Missense Mutations

Polyphen- 2

Provean

MUpro

SNP&GO

Sift

Score

prediction

Score

prediction

SVM score

Protein structure stability

Score

Prediction

Score

Prediction

p.Pro302Ala

0.028

Benign

−4.257

Deleterious

−0.797

Decrease stability

(0.4)

Neutral

0.00

Benign

p.Thr 305 Ala

0.00

Benign

−0.387

Neutral

0.134

Increase stability

(0.05)

Neutral

0.00

Benign

p.Thr331Ala

0.025

Benign

−1.100

Neutral

0.122

Increase stability

(0.03)

Neutral

0.00

Benign

p.Thr331Ala

0.025

Benign

−1.100

Neutral

0.122

Increase stability

(0.03)

Neutral

0.00

Benign

p.Ser325Gly

0.014

Benign

−2.331

Neutral

−0.063

Decrease stability

(0.1)

Neutral

0.00

Benign

p.Trp 432Arg

1.00

Damaging

−12.18

Deleterious

−0.411

Decrease stability

(0.8)

Disease

Na

Na

  1. Pathogenecity of missense mutations was calculated by five different softwares to check for the protein structure stability and deleterious effects. Na not available